PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624516.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 248aa    MW: 28632.8 Da    PI: 7.149
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G  +W+  +++ g+ R++k+c++rw +yl
   XP_009624516.1 14 KGTWTPEEDRKLAAYVTKYGCWNWRQLPKYAGLARCGKSCRLRWMNYL 61
                     799*****************99************************97 PP

2Myb_DNA-binding55.71.1e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eEd++++++++qlG++ W+ Ia +++ gR+++++k++w++
   XP_009624516.1  67 RGNYTKEEDDIILKLHAQLGNR-WSIIAGHLP-GRSDNEIKNHWHT 110
                      899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.335961IPR017930Myb domain
SuperFamilySSF466899.87E-3111108IPR009057Homeodomain-like
SMARTSM007172.8E-101363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-241568IPR009057Homeodomain-like
CDDcd001672.92E-91661No hitNo description
PROSITE profilePS5129426.49462116IPR017930Myb domain
SMARTSM007176.4E-1766114IPR001005SANT/Myb domain
PfamPF002491.7E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-2669115IPR009057Homeodomain-like
CDDcd001671.79E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVRTPSYDEN GKKKGTWTPE EDRKLAAYVT KYGCWNWRQL PKYAGLARCG KSCRLRWMNY  60
LRPNIKRGNY TKEEDDIILK LHAQLGNRWS IIAGHLPGRS DNEIKNHWHT SLKKRANHYA  120
PNSSDSESKS INQDSSTRRK SVENQNAISP NNCMRSYETV LESSHMSAKQ SSSEELSSYT  180
TDYQVFQEEA ILMENSGSFW TEPFLVDSSF SSRTDYVVPS IDCELVCPPS PFIGHEFLSS  240
FDLDEYNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141177109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624516.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLK4CFM21e-111K4CFM2_SOLLC; Uncharacterized protein
STRINGSolyc07g053240.2.11e-110(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-58myb domain protein 15